changed layout of ruby source

[biopieces.git] / bp_bin / find_genes

diff --git a/bp_bin/find_genes b/bp_bin/find_genes
index 16cba9ba59573c37690b6a5297ce9e160388c67e..b365ab27a261d0cbf93d9659ce58009ca37ac26a 100755 (executable)
--- a/bp_bin/find_genes
+++ b/bp_bin/find_genes
@@ -29,12 +29,13 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
-require 'biopieces'
-require 'fasta'
-require 'prodigal'
+require 'maasha/biopieces'
+require 'maasha/fasta'
+require 'maasha/prodigal'
 
 casts = []
-casts << {:long=>'full', :short=>'f', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'full',      :short=>'f', :type=>'flag',   :mandatory=>false, :default=>nil,      :allowed=>nil,           :disallowed=>nil}
+casts << {:long=>'procedure', :short=>'p', :type=>'string', :mandatory=>true,  :default=>'single', :allowed=>'single,meta', :disallowed=>nil}
 
 bp = Biopieces.new