added procedure switch to find_genes

[biopieces.git] / bp_bin / find_genes

diff --git a/bp_bin/find_genes b/bp_bin/find_genes
index 16cba9ba59573c37690b6a5297ce9e160388c67e..f0d64c8365300b3c970dd43fd6f6f7c1ed67f9e1 100755 (executable)
--- a/bp_bin/find_genes
+++ b/bp_bin/find_genes
@@ -34,7 +34,8 @@ require 'fasta'
 require 'prodigal'
 
 casts = []
-casts << {:long=>'full', :short=>'f', :type=>'flag', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
+casts << {:long=>'full', :short=>'f', :type=>'flag',      :mandatory=>false, :default=>nil,      :allowed=>nil,           :disallowed=>nil}
+casts << {:long=>'full', :short=>'p', :type=>'procedure', :mandatory=>true,  :default=>'single', :allowed=>'single,meta', :disallowed=>nil}
 
 bp = Biopieces.new