options = Biopieces.options_parse(ARGV, casts)
if options[:forward_rc]
- options[:forward] = Seq.new("test", options[:forward_rc], 'dna').revcomp.seq
+ options[:forward] = Seq.new("test", options[:forward_rc], :dna).reverse.complement.seq
end
if options[:reverse_rc]
- options[:reverse] = Seq.new("test", options[:reverse_rc], 'dna').revcomp.seq
+ options[:reverse] = Seq.new("test", options[:reverse_rc], :dna).reverse.complement.seq
end
raise ArgumentError, "no adaptor specified" unless options[:forward] or options[:reverse]