refactoring of assemble_pairs

[biopieces.git] / bp_bin / create_blast_index

diff --git a/bp_bin/create_blast_index b/bp_bin/create_blast_index
index 61f75ffaaad781bea37083b7e220d93b58536b2c..62bac6ecd9f6c55fd19b2b35ba3286d406cff9d9 100755 (executable)
--- a/bp_bin/create_blast_index
+++ b/bp_bin/create_blast_index
@@ -69,12 +69,13 @@ close $fh_tmp;
 
 $arg = "-t $options->{ 'index_name' }";
 
-if ( $seq_type =~ /protein/i ) {
+if ( $seq_type eq "PROTEIN" ) {
     $arg .= " -p T";
 } else {
     $arg .= " -p F";
 }
 
+$arg .= " -v 12000";
 $arg .= " -i $file_tmp";
 
 if ( $options->{ 'verbose' } )