refactoring of assemble_pairs

[biopieces.git] / bp_bin / calc_bit_scores

diff --git a/bp_bin/calc_bit_scores b/bp_bin/calc_bit_scores
index a6347019c2c1dcfb41fb89ea7403ac4218b6d20c..6da3afbddde48793a9ccd3ef43d5130fbb25f58b 100755 (executable)
--- a/bp_bin/calc_bit_scores
+++ b/bp_bin/calc_bit_scores
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
 
 # Copyright (C) 2007-2009 Martin A. Hansen.
 
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 use Maasha::Seq;
@@ -68,7 +69,7 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
 
 undef $record;
 
-if ( $type eq "protein" ) {
+if ( $type eq "PROTEIN" ) {
     $bit_max = 4;
 } else {
     $bit_max = 2;