fixed bug in bwa_seq

[biopieces.git] / bp_bin / bwa_seq

diff --git a/bp_bin/bwa_seq b/bp_bin/bwa_seq
index ed46c201524fa58a0832ecf7c763780b1c69e602..a9cbe186c9563e957afa3251443da6a7dcaa5e39 100755 (executable)
--- a/bp_bin/bwa_seq
+++ b/bp_bin/bwa_seq
@@ -57,7 +57,7 @@ $in  = Maasha::Biopieces::read_stream( $options->{ "stream_in" } );
 $out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
 
 if ( defined $options->{ 'genome' } ) {
-    $index = "$ENV{ 'BP_DATA' }/genomes/$options->{ 'genome' }/bowtie/$options->{ 'genome' }";
+    $index = "$ENV{ 'BP_DATA' }/genomes/$options->{ 'genome' }/bwa/$options->{ 'genome' }";
 } elsif (defined $options->{ 'index_name' } ) {
     $index = $options->{ 'index_name' };
 }