added missing files

[biopieces.git] / bp_bin / assemble_seq_ray

diff --git a/bp_bin/assemble_seq_ray b/bp_bin/assemble_seq_ray
index 441fb507ede8c228fbcad32c6ff242504926a538..fbef82aedd72fba3bc268adaba38fba6eed4eaa0 100755 (executable)
--- a/bp_bin/assemble_seq_ray
+++ b/bp_bin/assemble_seq_ray
@@ -141,7 +141,11 @@ file_fasta = File.join(options[:directory], "sequence_in.fasta")
 Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
        Fasta.open(file_fasta, mode="w") do |fasta_io|
                input.each_record do |record|
-                       fasta_io.puts record
+      if record[:SEQ_NAME] and record[:SEQ]
+        seq = Seq.new_bp(record)
+
+                         fasta_io.puts seq.to_fasta
+      end
                end
        end