added assemble_seq_velvet draft biopiece

[biopieces.git] / bp_bin / assemble_seq_idba

diff --git a/bp_bin/assemble_seq_idba b/bp_bin/assemble_seq_idba
index 1fad90fea89cb6328a92194a10534fd9ec4e3fe0..c1d72a23f778a5aa7d4c54f1642ad0fccba2f294 100755 (executable)
--- a/bp_bin/assemble_seq_idba
+++ b/bp_bin/assemble_seq_idba
@@ -49,7 +49,7 @@ options = bp.parse(ARGV, casts)
 
 Dir.mkdir(options[:directory]) unless Dir.exists?(options[:directory])
 
-file_fasta = [options[:directory], options[:name] ].join(File::SEPARATOR) + ".fna"
+file_fasta = [options[:directory], options[:name]].join(File::SEPARATOR) + ".fna"
 
 Fasta.open(file_fasta, mode="w") do |fasta_io|
   bp.each_record do |record|
@@ -58,7 +58,7 @@ Fasta.open(file_fasta, mode="w") do |fasta_io|
 end
 
 unless File.size(file_fasta) == 0
-  output = [options[:directory], options[:name] ].join(File::SEPARATOR)
+  output = [options[:directory], options[:name]].join(File::SEPARATOR)
 
   commands = []
   commands << "nice -n 19"