removed debug message

[biopieces.git] / bp_bin / analyze_tags

diff --git a/bp_bin/analyze_tags b/bp_bin/analyze_tags
index f21478d23621bda8e3d47f22066d24afbd2f1726..181beb501b13b3b72b01a73e128144051419547c 100755 (executable)
--- a/bp_bin/analyze_tags
+++ b/bp_bin/analyze_tags
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
 
 # Copyright (C) 2007-2009 Martin A. Hansen.
 
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 use Maasha::Seq;
@@ -34,7 +35,7 @@ use Maasha::Seq;
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
-my ( $run_time_beg, $run_time_end, $options, $in, $out, $record, %len_hash, %clone_hash, $clones, $key, $tag_record );
+my ( $options, $in, $out, $record, %len_hash, %clone_hash, $clones, $key, $tag_record );
 
 $options = Maasha::Biopieces::parse_options();
 
@@ -74,26 +75,22 @@ foreach $key ( sort { $a <=> $b } keys %len_hash )
     Maasha::Biopieces::put_record( $tag_record, $out );
 }
 
+Maasha::Biopieces::close_stream( $in );
+Maasha::Biopieces::close_stream( $out );
+
 
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
 BEGIN
 {
-    $run_time_beg = Maasha::Biopieces::run_time();
-
-    Maasha::Biopieces::log_biopiece();
+    Maasha::Biopieces::status_set();
 }
 
 
 END
 {
-    Maasha::Biopieces::close_stream( $in );
-    Maasha::Biopieces::close_stream( $out );
-
-    $run_time_end = Maasha::Biopieces::run_time();
-
-    Maasha::Biopieces::run_time_print( $run_time_beg, $run_time_end, $options );
+    Maasha::Biopieces::status_log();
 }
 
 
@@ -101,4 +98,3 @@ END
 
 
 __END__
-