refactoring of assemble_pairs

[biopieces.git] / bp_bin / analyze_seq

diff --git a/bp_bin/analyze_seq b/bp_bin/analyze_seq
index f54b9054ea8d96862d77298fdd11b5770c3755b8..2c38a274beeb593394ec5d33663d4dec1129de23 100755 (executable)
--- a/bp_bin/analyze_seq
+++ b/bp_bin/analyze_seq
@@ -38,8 +38,8 @@ options = Biopieces.options_parse(ARGV, casts)
 
 Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
   input.each_record do |record|
-    if record.has_key? :SEQ
-      seq  = Seq.new(record[:SEQ_NAME], record[:SEQ], record[:SEQ_TYPE], record[:SCORE])
+    if record[:SEQ]
+      seq  = Seq.new_bp(record)
       comp = seq.composition
 
       comp.each_pair do |key,val|