trouble shooting buffering problem

[biopieces.git] / bp_bin / analyze_seq

diff --git a/bp_bin/analyze_seq b/bp_bin/analyze_seq
index d668c99cf4a93bf13675307ba7b9fffe0751ee22..81ad0e16aa20393fad2662eb930c950e97d81822 100755 (executable)
--- a/bp_bin/analyze_seq
+++ b/bp_bin/analyze_seq
@@ -44,12 +44,12 @@ bp.each_record do |record|
     comp = seq.composition
 
     comp.each_pair do |key,val|
-      record["RES[#{key}]".to_sym] = val
+      record["RES_#{key}"] = val
     end
 
-    record["HARD_MASK%".to_sym] = seq.hard_mask
-    record["SOFT_MASK%".to_sym] = seq.soft_mask
-    record["GC%".to_sym]        = ((comp["G"] + comp["C"]).to_f / (seq.len - seq.indels).to_f * 100.0).round(2)
+    record["HARD_MASK"] = seq.hard_mask
+    record["SOFT_MASK"] = seq.soft_mask
+    record["GC"]        = ((comp["G"] + comp["C"]).to_f / (seq.len - seq.indels).to_f * 100.0).round(2)
   end
 
   bp.puts record