polished analyze_assembly

[biopieces.git] / bp_bin / analyze_assembly

diff --git a/bp_bin/analyze_assembly b/bp_bin/analyze_assembly
index c6423f8e93faecefb05f899289f8bbbdf6bab9c1..89b7b32ce6f64e778d395b511a9271db6be66f07 100755 (executable)
--- a/bp_bin/analyze_assembly
+++ b/bp_bin/analyze_assembly
@@ -90,11 +90,7 @@ new_record[:MIN]        = lengths.min
 new_record[:MEAN]       = (total.to_f / lengths.size.to_f).to_i
 new_record[:TOTAL]      = total
 new_record[:COUNT]      = lengths.size
-
-if options[:gene_cov]
-  new_record[:GENE_COV]   = gene_cov
-  new_record[:GENE_RATIO] = (gene_cov.to_f / total.to_f).round(4)
-end
+new_record[:GENE_COV]   = gene_cov if options[:gene_cov]
 
 bp.puts new_record