use Maasha::KISS;
use Maasha::Biopieces;
use Maasha::Fasta;
-use Maasha::BGB::Common;
+use Maasha::BGB::Track;
use Maasha::BGB::Wiggle;
use Maasha::Filesys;
Maasha::Biopieces::put_record( $record, $out ) if not $options->{ "no_stream" };
}
- $num = Maasha::BGB::Common::max_track( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } );
+ $num = Maasha::BGB::Track::max_track( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } );
$num = sprintf( "%04d", $num + 10 );
foreach $key ( keys %fh_hash )
Maasha::Filesys::file_copy( "$tmp_dir/$key", "$dst_dir/track_data.kiss" );
Maasha::KISS::kiss_sort( "$dst_dir/track_data.kiss" );
- Maasha::KISS::kiss_index( "$dst_dir/track_data.kiss" );
}
elsif ( $options->{ 'track_type' } eq 'wiggle' )
{