added missing files

[biopieces.git] / bp_bin / BGB_intersect

diff --git a/bp_bin/BGB_intersect b/bp_bin/BGB_intersect
index 7bf85744b28d72fad2eaa5ba44f18a1c2df050b3..d41593e7df2ca5db6849b2597257eb48933e3e58 100755 (executable)
--- a/bp_bin/BGB_intersect
+++ b/bp_bin/BGB_intersect
@@ -30,7 +30,7 @@ use warnings;
 use strict;
 use Data::Dumper;
 use Maasha::Biopieces;
-use Maasha::BGB::Common;
+use Maasha::BGB::Track;
 use Maasha::KISS;
 
 
@@ -61,15 +61,15 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
     Maasha::Biopieces::put_record( $record, $out );
 }
 
-Maasha::Common::error( qq(Bad user: "$options->{ 'user' }") ) if not grep /^$options->{ 'user' }$/, Maasha::BGB::Common::list_users();
+Maasha::Common::error( qq(Bad user: "$options->{ 'user' }") ) if not grep /^$options->{ 'user' }$/, Maasha::BGB::Track::list_users();
 
-@contigs = Maasha::BGB::Common::list_contigs( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } );
+@contigs = Maasha::BGB::Track::list_contigs( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } );
 
 foreach $contig ( @contigs )
 {
     undef %hash;
 
-    @tracks = Maasha::BGB::Common::list_track_dir( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' }, $contig );
+    @tracks = Maasha::BGB::Track::list_track_dir( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' }, $contig );
 
     foreach $track ( @tracks )
     {