public:
BlastDB(float, float, float, float);
+ BlastDB();
~BlastDB();
void generateDB();
void addSequence(Sequence);
vector<int> findClosestSequences(Sequence*, int);
- map<int, float> findClosest(Sequence*, int); //template index -> searchscore
-
+ vector<int> findClosestMegaBlast(Sequence*, int);
+
private:
string dbFileName;
string queryFileName;