#ifndef BCF_H
#define BCF_H
+#define BCF_VERSION "0.1.17-dev (r973:277)"
+
#include <stdint.h>
#include <zlib.h>
int bcf_is_indel(const bcf1_t *b);
bcf_hdr_t *bcf_hdr_subsam(const bcf_hdr_t *h0, int n, char *const* samples, int *list);
int bcf_subsam(int n_smpl, int *list, bcf1_t *b);
+ // move GT to the first FORMAT field
+ int bcf_fix_gt(bcf1_t *b);
+ // update PL generated by old samtools
+ int bcf_fix_pl(bcf1_t *b);
+ // convert PL to GLF-like 10-likelihood GL
+ int bcf_gl10(const bcf1_t *b, uint8_t *gl);
+ // convert up to 4 INDEL alleles to GLF-like 10-likelihood GL
+ int bcf_gl10_indel(const bcf1_t *b, uint8_t *gl);
// string hash table
void *bcf_build_refhash(bcf_hdr_t *h);