preliminary contrast variant caller

[samtools.git] / bcftools / Makefile

diff --git a/bcftools/Makefile b/bcftools/Makefile
index d2db8315c48fb29b7ed31f5b874e4bf6b6ab32c2..e3b92e9d29f96734495a4acb0c536642a1918d42 100644 (file)
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -1,9 +1,9 @@
 CC=                    gcc
-CFLAGS=                -g -Wall #-O2 #-fPIC #-m64 #-arch ppc
-DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-LOBJS=         bcf.o vcf.o bcfutils.o prob1.o index.o
+CFLAGS=                -g -Wall -O2 #-m64 #-arch ppc
+DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_BCF_QUAD
+LOBJS=         bcf.o vcf.o bcfutils.o prob1.o kfunc.o index.o fet.o
 OMISC=         ..
-AOBJS=         vcfout.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
+AOBJS=         call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
 PROG=          bcftools
 INCLUDES=      
 SUBDIRS=       .