compute max SP and max GQ from sample genotypes

[samtools.git] / bcftools / Makefile

diff --git a/bcftools/Makefile b/bcftools/Makefile
index e3b92e9d29f96734495a4acb0c536642a1918d42..8b890ba67e7ca5146bfc05e533884f52bc8d371a 100644 (file)
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -1,7 +1,7 @@
 CC=                    gcc
 CFLAGS=                -g -Wall -O2 #-m64 #-arch ppc
-DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_BCF_QUAD
-LOBJS=         bcf.o vcf.o bcfutils.o prob1.o kfunc.o index.o fet.o
+DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
+LOBJS=         bcf.o vcf.o bcfutils.o prob1.o ld.o kfunc.o index.o fet.o bcf2qcall.o
 OMISC=         ..
 AOBJS=         call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
 PROG=          bcftools
@@ -34,8 +34,12 @@ bcftools:lib $(AOBJS)
                $(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lz -L. -lbcf
 
 bcf.o:bcf.h
+vcf.o:bcf.h
+index.o:bcf.h
+bcfutils.o:bcf.h
 prob1.o:prob1.h bcf.h
-vcfout.o:bcf.h prob1.h
+call1.o:prob1.h bcf.h
+bcf2qcall.o:bcf.h
 main.o:bcf.h
 
 bcf.pdf:bcf.tex