missing a column in VCF output...

[samtools.git] / bcf.c

diff --git a/bcf.c b/bcf.c
index 9d50a573178f2b95aa9562537f88e03c3a960078..7286acaf9912744d15ec516ad695bc23801e35b1 100644 (file)
--- a/bcf.c
+++ b/bcf.c
@@ -222,6 +222,7 @@ char *bcf_fmt(bcf_t *bp, bcf1_t *b)
        fmt_str(b->ref, &s); kputc('\t', &s);
        fmt_str(b->alt, &s); kputc('\t', &s);
        kputw(b->qual, &s); kputc('\t', &s);
+       fmt_str(b->flt, &s); kputc('\t', &s);
        fmt_str(b->info, &s); kputc('\t', &s);
        fmt_str(b->fmt, &s);
        x = b->n_alleles * (b->n_alleles + 1) / 2;