added warning for duplicate @RG tag in header

[bamtools.git] / bamtools_tool.h

diff --git a/bamtools_tool.h b/bamtools_tool.h
index 7d2fb6bb3d17c0f162320c3ab9a181031a8fcfee..bcd5cfed040e72b2be997fee7bc04c94af64da38 100644 (file)
--- a/bamtools_tool.h
+++ b/bamtools_tool.h
@@ -3,12 +3,10 @@
 // Marth Lab, Department of Biology, Boston College
 // All rights reserved.
 // ---------------------------------------------------------------------------
-// Last modified: 1 June 2010
+// Last modified: 2 June 2010
 // ---------------------------------------------------------------------------
 // Base class for all other BamTools sub-tools
-//
-// ** Expand to multiple?? 
-//
+// All derived classes must provide Help() and Run() methods
 // ***************************************************************************
 
 #ifndef BAMTOOLS_ABSTRACTTOOL_H
@@ -21,16 +19,12 @@ namespace BamTools {
 class AbstractTool {
   
     public:
-        AbstractTool(void) : STDIN("stdin"), STDOUT("stdout") { }
+        AbstractTool(void) { }
         virtual ~AbstractTool(void) { }
 
     public:
         virtual int Help(void) =0;
         virtual int Run(int argc, char* argv[]) =0; 
-        
-    public:
-        const std::string STDIN;
-        const std::string STDOUT;
 };
   
 } // namespace BamTools