* samtools-0.1.2-22

[samtools.git] / bamtk.c

diff --git a/bamtk.c b/bamtk.c
index b55415ed6a9286b7e50366fdb8f8815399332a71..a9d852d49060732f9f543e936c267ab3f9f3fe5d 100644 (file)
--- a/bamtk.c
+++ b/bamtk.c
@@ -3,7 +3,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.2-12"
+#define PACKAGE_VERSION "0.1.2-22"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
@@ -17,7 +17,7 @@ int bam_rmdup(int argc, char *argv[]);
 int bam_flagstat(int argc, char *argv[]);
 
 int faidx_main(int argc, char *argv[]);
-int glf_view_main(int argc, char *argv[]);
+int glf3_view_main(int argc, char *argv[]);
 
 static int view_aux(const bam1_t *b, void *data)
 {
@@ -56,7 +56,12 @@ int bam_view(int argc, char *argv[])
                bam_header_write(fpout, header);
        }
        if (is_header || is_headeronly) {
-               int i;
+               int i, c;
+               c = header->text[header->l_text-1];
+               header->text[header->l_text-1] = 0;
+               printf("%s", header->text);
+               if (c) putchar(c);
+               header->text[header->l_text-1] = c;
                for (i = 0; i < header->n_targets; ++i)
                        printf("@SQ\tSN:%s\tLN:%d\n", header->target_name[i], header->target_len[i]);
                if (is_headeronly) {
@@ -125,7 +130,7 @@ int main(int argc, char *argv[])
        else if (strcmp(argv[1], "faidx") == 0) return faidx_main(argc-1, argv+1);
        else if (strcmp(argv[1], "fixmate") == 0) return bam_mating(argc-1, argv+1);
        else if (strcmp(argv[1], "rmdup") == 0) return bam_rmdup(argc-1, argv+1);
-       else if (strcmp(argv[1], "glfview") == 0) return glf_view_main(argc-1, argv+1);
+       else if (strcmp(argv[1], "glfview") == 0) return glf3_view_main(argc-1, argv+1);
        else if (strcmp(argv[1], "flagstat") == 0) return bam_flagstat(argc-1, argv+1);
 #ifndef _NO_CURSES
        else if (strcmp(argv[1], "tview") == 0) return bam_tview_main(argc-1, argv+1);