* samtools-0.1.5-17 (r416)

[samtools.git] / bamtk.c

diff --git a/bamtk.c b/bamtk.c
index b38b0d49559073f9e607bb7469dc9399f2d800b6..60f6204cef36350d3ee2cca8f2f0216712faa0fb 100644 (file)
--- a/bamtk.c
+++ b/bamtk.c
@@ -1,9 +1,10 @@
 #include <stdio.h>
 #include <unistd.h>
+#include <assert.h>
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.3-24 (r296)"
+#define PACKAGE_VERSION "0.1.5-13 (r416)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
@@ -76,7 +77,7 @@ static int usage()
        fprintf(stderr, "         merge       merge multiple sorted alignment files\n");
        fprintf(stderr, "         pileup      generate pileup output\n");
        fprintf(stderr, "         faidx       index/extract FASTA\n");
-#ifndef _NO_CURSES
+#if _CURSES_LIB != 0
        fprintf(stderr, "         tview       text alignment viewer\n");
 #endif
        fprintf(stderr, "         index       index alignment\n");
@@ -84,7 +85,7 @@ static int usage()
        fprintf(stderr, "         rmdup       remove PCR duplicates\n");
        fprintf(stderr, "         glfview     print GLFv3 file\n");
        fprintf(stderr, "         flagstat    simple stats\n");
-       fprintf(stderr, "         fillmd      fill the MD tag and change identical base to =\n");
+       fprintf(stderr, "         fillmd      recalculate MD/NM tags and '=' bases\n");
        fprintf(stderr, "\n");
        return 1;
 }
@@ -106,7 +107,7 @@ int main(int argc, char *argv[])
        else if (strcmp(argv[1], "flagstat") == 0) return bam_flagstat(argc-1, argv+1);
        else if (strcmp(argv[1], "tagview") == 0) return bam_tagview(argc-1, argv+1);
        else if (strcmp(argv[1], "fillmd") == 0) return bam_fillmd(argc-1, argv+1);
-#ifndef _NO_CURSES
+#if _CURSES_LIB != 0
        else if (strcmp(argv[1], "tview") == 0) return bam_tview_main(argc-1, argv+1);
 #endif
        else {