int main_cut_target(int argc, char *argv[]);
int main_phase(int argc, char *argv[]);
int main_cat(int argc, char *argv[]);
+int main_depth(int argc, char *argv[]);
int faidx_main(int argc, char *argv[]);
int glf3_view_main(int argc, char *argv[]);
fprintf(stderr, " sort sort alignment file\n");
fprintf(stderr, " pileup generate pileup output\n");
fprintf(stderr, " mpileup multi-way pileup\n");
+ fprintf(stderr, " depth compute the depth\n");
fprintf(stderr, " faidx index/extract FASTA\n");
#if _CURSES_LIB != 0
fprintf(stderr, " tview text alignment viewer\n");
else if (strcmp(argv[1], "cat") == 0) return main_cat(argc-1, argv+1);
else if (strcmp(argv[1], "targetcut") == 0) return main_cut_target(argc-1, argv+1);
else if (strcmp(argv[1], "phase") == 0) return main_phase(argc-1, argv+1);
+ else if (strcmp(argv[1], "depth") == 0) return main_depth(argc-1, argv+1);
#if _CURSES_LIB != 0
else if (strcmp(argv[1], "tview") == 0) return bam_tview_main(argc-1, argv+1);
#endif