case 'n': is_by_qname = 1; break;
}
}
- if (optind + 3 >= argc) {
+ if (optind + 2 >= argc) {
fprintf(stderr, "Usage: samtools merge [-n] <out.bam> <in1.bam> <in2.bam> [...]\n");
return 1;
}
}
}
if (optind + 2 > argc) {
- fprintf(stderr, "Usage: samtools sort [-n] [-m <maxMem>] <in.baf> <out.prefix>\n");
+ fprintf(stderr, "Usage: samtools sort [-n] [-m <maxMem>] <in.bam> <out.prefix>\n");
return 1;
}
bam_sort_core(is_by_qname, argv[optind], argv[optind+1], max_mem);