typedef struct {
float het_rate, theta;
- int n_hap;
+ int n_hap, cap_mapQ, is_soap;
float eta, q_r;
double *fk, *coef;
typedef struct {
int indel1, indel2;
- int cnt1, cnt2, cnt_ambi, cnt_anti;
+ int cnt1, cnt2, cnt_anti;
+ int cnt_ref, cnt_ambi;
char *s[2];
//
int gt, gl[2];