typedef struct {
float het_rate, theta;
- int n_hap;
+ int n_hap, cap_mapQ;
float eta, q_r;
double *fk, *coef;
uint32_t glf2cns(const glf1_t *g, int q_r);
bam_maqindel_opt_t *bam_maqindel_opt_init();
- bam_maqindel_ret_t *bam_maqindel(int n, int pos, const bam_maqindel_opt_t *mi, const bam_pileup1_t *pl, const char *ref);
+ bam_maqindel_ret_t *bam_maqindel(int n, int pos, const bam_maqindel_opt_t *mi, const bam_pileup1_t *pl, const char *ref,
+ int _n_types, int *_types);
void bam_maqindel_ret_destroy(bam_maqindel_ret_t*);
#ifdef __cplusplus