for (i = 0; i < n_types; ++i) {
ka_param_t ap = ka_param_blast;
ap.band_width = 2 * types[n_types - 1] + 2;
- ap.gap_end = 0;
+ ap.gap_end_ext = 0;
// write ref2
for (k = 0, j = left; j <= pos; ++j)
ref2[k++] = bam_nt16_nt4_table[bam_nt16_table[(int)ref[j]]];