* use the revised MAQ error model for mpileup

[samtools.git] / bam2bcf.h

diff --git a/bam2bcf.h b/bam2bcf.h
index 655174f585f663b54c0e10327df45eddb8942616..ddc6b6146fb4e9daab037bd61197b2a1ab21de2d 100644 (file)
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -8,15 +8,15 @@ struct __bcf_callaux_t;
 typedef struct __bcf_callaux_t bcf_callaux_t;
 
 typedef struct {
-       int depth;
+       int depth, d[4], ed[4], qsum[4];
        uint64_t sum_Q2;
-       float p[25], esum[5];
+       float p[25];
 } bcf_callret1_t;
 
 typedef struct {
        int a[5]; // alleles: ref, alt, alt2, alt3
        int n, n_alleles, shift, ori_ref, unseen;
-       int depth, rmsQ;
+       int d[4], ed[4], depth, rmsQ;
        uint8_t *PL;
 } bcf_call_t;