* allow to set min base q

[samtools.git] / bam2bcf.h

diff --git a/bam2bcf.h b/bam2bcf.h
index 89f4fa130886e388c18f5989b2c2b5bd33138526..655174f585f663b54c0e10327df45eddb8942616 100644 (file)
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -2,7 +2,7 @@
 #define BAM2BCF_H
 
 #include <stdint.h>
-#include "bcf.h"
+#include "bcftools/bcf.h"
 
 struct __bcf_callaux_t;
 typedef struct __bcf_callaux_t bcf_callaux_t;
@@ -24,7 +24,7 @@ typedef struct {
 extern "C" {
 #endif
 
-       bcf_callaux_t *bcf_call_init(double theta);
+       bcf_callaux_t *bcf_call_init(double theta, int min_baseQ);
        void bcf_call_destroy(bcf_callaux_t *bca);
        int bcf_call_glfgen(int _n, const bam_pileup1_t *pl, int ref_base /*4-bit*/, bcf_callaux_t *bca, bcf_callret1_t *r);
        int bcf_call_combine(int n, const bcf_callret1_t *calls, int ref_base /*4-bit*/, bcf_call_t *call);