typedef struct __bcf_callaux_t bcf_callaux_t;
typedef struct {
- int depth;
- uint64_t sum_Q2;
- float p[25], esum[5];
+ int depth, qsum[4];
+ int anno[16];
+ float p[25];
} bcf_callret1_t;
typedef struct {
int a[5]; // alleles: ref, alt, alt2, alt3
int n, n_alleles, shift, ori_ref, unseen;
- int depth, rmsQ;
+ int anno[16], depth;
uint8_t *PL;
} bcf_call_t;