@copyright Genome Research Ltd.
*/
+#define BAM_VERSION "0.1.14 (r947:199)"
+
#include <stdint.h>
#include <stdlib.h>
#include <string.h>
*/
extern int bam_is_be;
+/*!
+ @abstract Verbose level between 0 and 3; 0 is supposed to disable all
+ debugging information, though this may not have been implemented.
+ */
+extern int bam_verbose;
+
/*! @abstract Table for converting a nucleotide character to the 4-bit encoding. */
extern unsigned char bam_nt16_table[256];
bam1_t *b;
int32_t qpos;
int indel, level;
- uint32_t is_del:1, is_head:1, is_tail:1, is_refskip:1;
+ uint32_t is_del:1, is_head:1, is_tail:1, is_refskip:1, aux:28;
} bam_pileup1_t;
typedef int (*bam_plp_auto_f)(void *data, bam1_t *b);