* samtools-0.1.8-21 (r780)

[samtools.git] / bam.h

diff --git a/bam.h b/bam.h
index a8769e26a38c3dc62ee4ded2dc793a90884d19a3..4c8536fd33366883028ff9b77bb95049682c5f9f 100644 (file)
--- a/bam.h
+++ b/bam.h
@@ -230,7 +230,7 @@ typedef struct __bam_iter_t *bam_iter_t;
   @param  b  pointer to an alignment
   @return    pointer to quality string
  */
-#define bam1_qual(b) ((b)->data + (b)->core.n_cigar*4 + (b)->core.l_qname + ((b)->core.l_qseq + 1)/2)
+#define bam1_qual(b) ((b)->data + (b)->core.n_cigar*4 + (b)->core.l_qname + (((b)->core.l_qseq + 1)>>1))
 
 /*! @function
   @abstract  Get a base on read
@@ -495,7 +495,7 @@ extern "C" {
                bam1_t *b;
                int32_t qpos;
                int indel, level;
-               uint32_t is_del:1, is_head:1, is_tail:1;
+               uint32_t is_del:1, is_head:1, is_tail:1, is_refskip:1;
        } bam_pileup1_t;
 
        typedef int (*bam_plp_auto_f)(void *data, bam1_t *b);