* samtools-0.1.3-20 (r276)

[samtools.git] / bam.h

diff --git a/bam.h b/bam.h
index 1195e75be3220a0ecfe569de249dc1a5a70780a5..163dc893e192d6eaa9ebfcc3b3b8614d142ca211 100644 (file)
--- a/bam.h
+++ b/bam.h
@@ -315,6 +315,9 @@ extern "C" {
         */
        bam_header_t *sam_header_read2(const char *fn_list);
 
+       bam_header_t *sam_header_read(tamFile fp);
+       int sam_header_parse(bam_header_t *h);
+
 #define sam_write1(header, b) bam_view1(header, b)
 
        /*!
@@ -512,17 +515,6 @@ extern "C" {
         */
        int bam_plbuf_push(const bam1_t *b, bam_plbuf_t *buf);
 
-       /*!
-         @abstract         A more convenient interface to bam_plbuf_push()
-         @param  fp        BAM file handler
-         @param  func      user defined function
-         @param  func_data user provided data
-
-         @discussion The file position indicator must be placed right
-         before the start of an alignment. See also bam_plbuf_push().
-        */
-       int bam_pileup_file(bamFile fp, int mask, bam_pileup_f func, void *func_data);
-
        struct __bam_lplbuf_t;
        typedef struct __bam_lplbuf_t bam_lplbuf_t;