requiring the most recent versions of software.
%\item[Testing] \emph{Constantly changing future release candidate}\\
-\item[``Always-ready-to-release'']\hfill\emph{Testing} (now \emph{squeeze})\\
+\item[``Always-ready-to-release'']\hfill\emph{Testing} (now \emph{wheezy})\\
% What to become a next \emph{Stable} release candidate.\\
Software versions known to be secure and of good quality.
% Software migrated from \emph{Unstable} which is known to be of good
of software.
%\item[Stable] \emph{Official release}\\
-\item[Official release]\hfill\emph{Stable} (now \emph{lenny})\\
+\item[Official release]\hfill\emph{Stable} (now \emph{squeeze})\\
% Software verified to be well tested and secure,
% Very stable (hence the name) and secure
% but might be lacking the most recent versions.\\% of the software.\\
%\subsubsection*{Stable}
\begin{description}[nolistsep,leftmargin=1pc,style=nextline]
-\item[Install on a hard-drive] \url{http://get.debian.net/}
-\item[Boot from CD/USB] \url{http://get.debian.net/live/}
+\item[Install on a hard-drive] \url{http://www.debian.org/distrib/}
+\item[Live CD/DVD] \url{http://www.debian.org/CD/live/}
\item[Run in a Virtual Machine] \url{http://neuro.debian.net/vm.html}
-\item[More options (e.g. buy pre-installed machine)] \url{http://debian.org/distrib}
-\item[Testing/Unstable version] \url{http://www.debian.org/devel/debian-installer}
+\item[Development version] \url{http://www.debian.org/devel/debian-installer}
\end{description}
% \ndsubsection{Get \emph{Testing/Unstable} Debian}
\ndsubsection{How to get support}
+\begin{description}[nolistsep,leftmargin=1pc,style=nextline]
+\item[Overview]
\url{http://www.debian.org/support}
-\begin{description}[nolistsep,leftmargin=1pc,style=nextline]
%\item[GUI]
% Use \emph{Synaptic Package Manager}
\item[Software bug]
%\item[Mailing lists]
\url{http://www.debian.org/MailingLists}\\
\url{http://forums.debian.net}\\
- \url{http://ask.debian.net}
+ \url{http://ask.debian.net}\\
+ \url{irc://irc.debian.org/debian}
%\end{description}
\item[Commercial support]
\url{http://www.debian.org/consultants}
\ndsubsection{Software at your fingertips}
\begin{flushright}
-\vspace{-0.5em}
+\vspace{-1em}
\url{http://neuro.debian.net/pkgs.html}
\end{flushright}
-\textit{Electrophysiology:} BioSig, Sigviewer, Brian, \ldots\\
-\textit{Machine Learning:} PyMVPA, scikits.learn, \ldots\\
-\textit{Imaging:} AFNI, FSL, Mricron, NiPy, Voxbo, \ldots\\
-\textit{Psychophysics:} PsychoPy, PyEPL, PyOptical, \ldots\\
-\vspace{-0.5em}
+\textit{Distributed computing:} Condor \\
+\textit{Electrophysiology:} BioSig, EEGLAB, Sigviewer, \ldots\\
+\textit{Machine Learning:} MDP, PyMVPA, sklearn, \ldots\\
+\textit{Neural Modeling:} Brian, PyNN, \ldots\\
+\textit{Imaging:} AFNI, FSL, Mricron, NiPy, SPM, \ldots\\
+\textit{Psychophysics:} PsychoPy, Psychtoolbox, \ldots\\
+\vspace{-0.8em}
+
+% TODO: Environments... -- list avail cloud env using NeuroDebian
\ndsubsection{Benefits from Debian integration}
\item Debian standards and policies guarantee quality and robustness.
\item Debian's centralized bug tracking system provides a unified
- single-point of entry for bug reporting and troubleshooting for any
- software in Debian.
+ single-point of entry for bug reporting and troubleshooting
+ for any software in Debian.
\item Debian makes software available through a world-wide distribution
network, thus offloading bandwidth demands.
software for more than 60 languages.
\end{description}
-\item Neuroscience software becomes a 1st-class citizen within the Debian
- project, which guarantees its availability, longevity, smooth
- installation and upgrades.
+\item Neuroscience software becomes a 1st-class citizen within the
+ Debian project, which guarantees its longevity, smooth installation
+ and upgrades.
%\item Participation in the Debian community helps to assure Debian's
% aptness for the neuroscientific software demands
\ndsubsection{Work-in-progress}
\begin{description}[nolistsep,leftmargin=1pc,style=nextline]
\item[Increased coverage]
-\textit{Electrophysiology:} NEURON, OpenElectrophy, \ldots \\
-\textit{Matlab/Octave toolboxes:} SPM, EEGLAB, \ldots \\
-\textit{Distributed computing:} Condor \\
-\textit{Imaging:} Connectomeviewer, Freesurfer, MIPAV \\
-
-\epigraph{Having FreeSurfer integrated into the Debian operating system by the NeuroDebian team would have enormous benefits for us, and for the thousands of users of FreeSurfer across the world.}{Prof. Bruce Fischl}{Director, Computational Core at Martinos Center at Massachusetts General Hospital, Charlestown, Massachusetts, USA}
+\textit{Electrophysiology:} Fieldtrip, \ldots \\
+\textit{Neural Modeling:} NEURON, (NEST) \\
+\textit{Imaging:} DTI-TK, Freesurfer, XNAT, \ldots
+% \epigraph{Having FreeSurfer integrated into the Debian operating system by the NeuroDebian team would have enormous benefits for us, and for the thousands of users of FreeSurfer across the world.}{Prof. Bruce Fischl}{Director, Computational Core at Martinos Center at Massachusetts General Hospital, Charlestown, Massachusetts, USA}
\item[Improved quality assurance]
Extended integration and regression testing
\item[Available snapshotting service]
All versions of packages readily available
\item[Data as the 1st-class citizen]
\url{http://neuro.debian.net/datasets.html}
-\item[Universal availability]
- % \begin{itemize}[nolistsep,leftmargin=1pc,topsep=0em]
- % \item Virtual Appliance enhancements
- %\item
- Cloud computing
- %\end{itemize}
-
+% yoh: see TODO above -- we can say that it is available already
+%\item[Universal availability]
+% % \begin{itemize}[nolistsep,leftmargin=1pc,topsep=0em]
+% % \item Virtual Appliance enhancements
+% %\item
+% Cloud computing
+% %\end{itemize}
\end{description}
\vspace{-0.5em}
\end{flushright}
-
+% TODO yoh: This one remains the best summary IMHO. But may be
+% we would just kick this section out an place Testimonials into References
\epigraph{The approach taken with NeuroDebian is plainly the most appropriate
approach to software distribution for the dominant platform in brain
image analysis, and I have great confidence that this project will be
\ndsubsection{Acknowledgements}
NeuroDebian is grateful to all Debian developers and contributors for
-developing the Debian operating system, and to Prof. James V. Haxby (PBS Department,
-Dartmouth College) for his continued support and endless supply of
-Italian espresso (\url{http://neuro.debian.net/coffeeart.html}).
+developing the Debian operating system, to
+\href{http://www.incf.org}{INCF} for the support in community outreach
+and technical collaborations, and to
+Prof. \href{http://haxbylab.dartmouth.edu}{James V. Haxby}
+(\href{http://www.dartmouth.edu/~psych}{PBS Department, Dartmouth
+ College}) for his continued support and endless supply of Italian
+espresso (\url{http://neuro.debian.net/coffeeart.html}).
+
+
+\ndsubsection{References}
+
+Halchenko, Y. O. \& Hanke, M. (2012). \href{http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2012.00022/full}{Open is not enough. Let’s take the next step: An integrated, community-driven computing platform for neuroscience}. Frontiers in Neuroinformatics, 6:22.
+
+% TODO: adjust for the new layout
+\url{http://neuro.debian.net/#publications}
%\columnbreak
\end{multicols}
projects / neurodebian.git / blobdiff