public:
AlignmentDB(string, string, int, float, float, float, float); //reads fastafile passed in and stores sequences
+ AlignmentDB(string);
~AlignmentDB();
Sequence findClosestSequence(Sequence*);
private:
int numSeqs, longest;
- float searchScore;
+ string method;
Database* search;
vector<Sequence> templateSequences;
Sequence emptySequence;
+ MothurOut* m;
};
/**************************************************************************************************/