usage: bamtools [--help] COMMAND [ARGS]
Available bamtools commands:
- count Prints number of alignments in BAM file
- coverage Prints coverage statistics from the input BAM file
- filter Filters BAM file(s) by user-specified criteria
- header Prints BAM header information
- index Generates index for BAM file
- merge Merge multiple BAM files into single file
- sam Prints the BAM file in SAM (text) format
- sort Sorts the BAM file according to some criteria
- stats Prints some basic statistics from the input BAM file
+ convert Converts between BAM and a number of other formats
+ count Prints number of alignments in BAM file
+ coverage Prints coverage statistics from the input BAM file
+ filter Filters BAM file(s) by user-specified criteria
+ header Prints BAM header information
+ index Generates index for BAM file
+ merge Merge multiple BAM files into single file
+ sam Prints the BAM file in SAM (text) format
+ sort Sorts the BAM file according to some criteria
+ stats Prints some basic statistics from the input BAM file
See 'bamtools help COMMAND' for more information on a specific command.