-## write.nexus.R (2012-03-02)
+## write.nexus.R (2012-03-30)
## Write Tree File in Nexus Format
## This file is part of the R-package `ape'.
## See the file ../COPYING for licensing issues.
-write.nexus <- function(..., file = "", translate = TRUE, original.data = NULL)
+write.nexus <- function(..., file = "", translate = TRUE)
{
obj <- list(...)
## We insure that all trees are in a list, even if there is a single one:
cat(paste("[R-package APE, ", date(), "]\n\n", sep = ""),
file = file, append = TRUE)
- if (!is.null(original.data))
- warning("the option 'original.data' is deprecated and will be removed soon. Please update your code.")
-
N <- length(obj[[1]]$tip.label)
cat("BEGIN TAXA;\n", file = file, append = TRUE)