RESOLVED
---------------------------------------------------------------------------------
-BARD AGPL -- added
-DierckxSpline new version built
-FAiR AGPL -- added
-StatFingerprints now builds
-WriteXLS (lots of) sysreq ignore added
+matlab Rice U added
+rwt matlab Rice U
+arrayImpute matlab
+rtiff tiff + gpl added
+sendplot rtiff
+BARD AGPL added
+DierckxSpline new version builds
+FAiR AGPL added
+StatFingerprints tcltk2 now builds
+WriteXLS (many) sysreq ignore added
mlbench added
adabag mlbench
ipred mlbench
+gWidgetsWWW Rpad, rebuilt
+rgrs xclip added alias_run,sysreq
+scagnostics scagnostics license -- added
+seewave flac added alias_run,sysreq
+snpXpert tcltk2 now builds
+tlnise tlnise license added
+tsModel tlnise now builds
+SuppDists build bombs, DESCRIPTION needs space, patch added
+qAnalyst SuppDists
+survcomp SuppDists
+BayesTree added one-line C++ patch
+HAPim added one-char DESCRIPTION patch
+MatchIt added one-line patch
+race remove debian/ from source tarball -- fixed in cran2deb
+RJaCGH contains zlib, added patch to remove it
+seqinr contains zlib, added patch to remove it
+rSymPy small patch for python path
OPEN ISSUES
---------------------------------------------------------------------------------
ADaCGH tilingArray (BioC)
-BayesTree C++ patch ?
DAAGbio limma (BioC ?)
-multtest BioBase (BioC ?)
-GExMap multtest (BioC)
-LMGene multtest (BioC)
+metaMA limma (BioC ?)
GFMaps affy (BioC)
GOSim GO.db (BioC)
-Geneland mapproj
-HAPim odd build failure
-MatchIt need small patch
Metabonomic PROcess (BioC ?)
PhViD LBE ????
-RJaCGH contains zli, may need patch
-RLadyBug needs small patch
+RLadyBug added small patch, still fails ??
Rsymphony build bombs, patch ?, Debian build
SNPMaP affxparser, SNPMaP.cdm (BioC)
SubpathwayMiner KEGG.db (BioC)
-SuppDists build bombs, unclear why
-TSpaid build bombs, wild linking ?
+gene2pathway KEGG.db (BioC)
+TSpadi build bombs on i386 but not amd64, wild linking ?
alphahull removed ?
-
+ash statlib ?
+bayesCGH snapCGH (BioC ?)
+classGraoh Rgraphviz (BioC ?)
+gcExplorer Rgraphviz (BioC ?)
+logilasso Rgraphviz (BioC ?)
+pcalg Rgraphviz (BioC ?)
+qdg pcalg -> Rgraphviz
+celsius BioBase (BioC ?)
+multtest BioBase (BioC ?)
+hopach BioBase (BioC ?)
+multtest BioBase (BioC ?)
+GExMap multtest (BioC)
+LMGene multtest (BioC)
+crosshybDetector marray (disappread ?)
+dlmap empty DESCRIPTION ?
+fPortfolio RSymphony (which will be in Debian)
+lsa Rstem ?
+mpm geneplotter (BioC ?)
+mvgraph statDA ?
+sabreR contains binary, lintian override ?
+sgeostat license ? package `5gone ?
+sisus annotate, Biobase (BioC ?)
+svSocket small patch re tcl path
+
REJECTED
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gpclib non-commercial
AIGIS gpclib non-commercial
+RSurvey gpclib non-commercial
+aspace gpclib
+tossm gpclib
+spatstat gpclib
DSpat spatstat -> gpclib non-commercial
SGCS spatstat -> gpclib
-RSurvey gpclib non-commercial
+arrayMissPattern spatstat -> gpclib
+ecespa spatstat -> gpclib
+spatclus spatstat -> gpclib
CoCo not-for-profit
+gmvalid CoCo not-for-profit
ConCalendar non-commercial
+mclust non-free
EMCC mclust
StatDA mclust
+chemometrics mclust
+clValid mclust
+latentnetHRT mclust
+sdcMicro mclust
+vabayelMix mclust
+mclust02 non-free
+clustTool mclust02
+clustvarsel mclust02
mapproj non-commercial
Geneland mapproj non-commercial
PTAk non-commercial
optmatch non-commercial
SpectralGEM optmatch non-commercial
realized non-commercial
+asypow acm non-commercial
+caMassClass non-commercial
+mapproj non-commercial
+rankreg non-profit
+rngwell19937 non-commercial
+spatialkernel gpc library in non-commercial
CANNOT BUILD
----------------------------------------------------------------------------------------------
Rlsf LSF required
Rsge SGE required
VhayuR Vhauy required
-
+gputools nvcc (>= 2.1)
+klar svmlight (non-commercial)
+rgrs xclip
+rimage C++ needs g++ 4.* update
+svGUI komodo
+wgaim asreml-r
+xgobi Xgobi
TODO:
-alphahull,arrayImpute,arrayMissPattern,ash,aspace,asypow,bayesCGH,caMassClass,celsius,
-chemometrics,clValid,classGraph,clustTool,clustvarsel,crosshybDetector,dlmap,ecesp
-a,fPortfolio,gWidgetsWWW,gcExplorer,gene2pathway,gmvalid,gpclib,gputools,hopach,
-ipred,klaR,latentnetHRT,logilasso,lsa,mapproj,mclust,mclust02,metaMA,mpm,multtest,mvgraph,
-pcalg,qAnalyst,qdg,rSymPy,race,rankreg,rgrs,rimage,rngwell19937,sabreR,scagnostics,
-sdcMicro,seewave,seqinr,sgeostat,sisus,snpXpert,spatclus,spatialkernel,spatstat
-survcomp,svGUI,svSocket,tlnise,tossm,tsModel,vabayelMix,wgaim,xgobi
projects / cran2deb.git / blobdiff