a few updates to PackagesWithIssues.txt

[cran2deb.git] / PackagesWithIssues.txt

diff --git a/PackagesWithIssues.txt b/PackagesWithIssues.txt
index 8602a1f73ea0e5ab9d99a56550ffe0cedea9bfb1..9976f5852aaa88df6f8441e38782803bfff6fca2 100644 (file)
--- a/PackagesWithIssues.txt
+++ b/PackagesWithIssues.txt
@@ -6,7 +6,7 @@ Package         Needs                   License         Other
 RESOLVED
 ---------------------------------------------------------------------------------
 matlab                                 Rice U          added                                   
-rwt            matlab
+rwt            matlab                  Rice U          
 arrayImpute    matlab
 rtiff                                  tiff + gpl      added
 sendplot       rtiff                   
@@ -18,37 +18,39 @@ WriteXLS                                            (many) sysreq ignore added
 mlbench                                        added
 adabag         mlbench                                 
 ipred          mlbench                                 
-gwidgetsWWW    Rpad, rebuilt
+gWidgetsWWW    Rpad, rebuilt
 rgrs           xclip                   added alias_run,sysreq
 scagnostics                            scagnostics license -- added
 seewave                flac                                    added alias_run,sysreq                  
 snpXpert       tcltk2                                  now builds 
 tlnise                                 tlnise license added
-toosm          tlnise                                  now builds                                      
+tsModel                tlnise                                  now builds                                      
 SuppDists                                              build bombs, DESCRIPTION needs space, patch added
 qAnalyst       SuppDists
 survcomp       SuppDists
+BayesTree                                              added one-line C++ patch 
+HAPim                                                  added one-char DESCRIPTION patch
+MatchIt                                                        added one-line patch
+race                                                   remove debian/ from source tarball -- fixed in cran2deb                         
+RJaCGH                                                 contains zlib, added patch to remove it
+seqinr                                                 contains zlib, added patch to remove it
+rSymPy                                                 small patch for python path
 
 OPEN ISSUES
 ---------------------------------------------------------------------------------
 ADaCGH         tilingArray (BioC)
-BayesTree                                              C++ patch ?
 DAAGbio                limma (BioC ?)
 metaMA         limma (BioC ?)
 GFMaps         affy (BioC)
 GOSim          GO.db (BioC)
-Geneland       mapproj
-HAPim                                                  odd build failure
-MatchIt                                                        need small patch
 Metabonomic    PROcess (BioC ?)
 PhViD          LBE ????
-RJaCGH                                                 contains zlib, may need patch
-RLadyBug                                               needs small patch
+RLadyBug                                               added small patch, still fails ??
 Rsymphony                                              build bombs, patch ?, Debian build
 SNPMaP         affxparser, SNPMaP.cdm (BioC)                                           
 SubpathwayMiner KEGG.db (BioC)
 gene2pathway    KEGG.db (BioC)
-TSpaid                                                 build bombs, wild linking ?
+TSpadi                                                 build bombs on i386 but not amd64, wild linking ?
 alphahull      removed ?
 ash                                    statlib ?
 bayesCGH       snapCGH (BioC ?)
@@ -69,11 +71,8 @@ fPortfolio   RSymphony (which will be in Debian)
 lsa            Rstem ?
 mpm            geneplotter (BioC ?)
 mvgraph                statDA ?
-rSymPy                                                 small patch
-race                                                   remove debian/ from source tarball ?                            
 sabreR                                                 contains binary, lintian override ?
-seqinr                                                 contains zlib 
-sgeostat       license ? package gone ?
+sgeostat       license ? package `5gone ?
 sisus          annotate, Biobase (BioC ?)
 svSocket                                               small patch re tcl path