snpXpert tcltk2 now builds
tlnise tlnise license added
tsModel tlnise now builds
-SuppDists build bombs, DESCRIPTION needs space, patch added
qAnalyst SuppDists
survcomp SuppDists
BayesTree added one-line C++ patch
HAPim added one-char DESCRIPTION patch
MatchIt added one-line patch
-race remove debian/ from source tarball -- fixed in cran2deb
+race remove debian/ from source tarball -- fixed in cran2deb
RJaCGH contains zlib, added patch to remove it
seqinr contains zlib, added patch to remove it
rSymPy small patch for python path
svSocket small patch re tcl path
+rgrs xclip sysreq/force added
+RLadyBug added patch, now works
+dlmap now works
+TSpadi now works
+ash statlib ?
+alphahull now works
+sgeostat now works
-OPEN ISSUES
+BLACKLISTED
---------------------------------------------------------------------------------
ADaCGH tilingArray (BioC)
DAAGbio limma (BioC ?)
GFMaps affy (BioC)
GOSim GO.db (BioC)
Metabonomic PROcess (BioC ?)
-PhViD LBE ????
-RLadyBug added small patch, still fails ??
-Rsymphony build bombs, patch ?, Debian build exists
+PhViD LBE (BioC)
SNPMaP affxparser, SNPMaP.cdm (BioC)
SubpathwayMiner KEGG.db (BioC)
gene2pathway KEGG.db (BioC)
-TSpadi build bombs on i386 but not amd64, wild linking ?
-alphahull removed ?
-ash statlib ?
bayesCGH snapCGH (BioC ?)
-classGraoh Rgraphviz (BioC ?)
+classGraph Rgraphviz (BioC ?)
gcExplorer Rgraphviz (BioC ?)
logilasso Rgraphviz (BioC ?)
pcalg Rgraphviz (BioC ?)
celsius BioBase (BioC ?)
multtest BioBase (BioC ?)
hopach BioBase (BioC ?)
-multtest BioBase (BioC ?)
GExMap multtest (BioC)
LMGene multtest (BioC)
+PCS multtest (BioC)
crosshybDetector marray (disappread ?)
-fPortfolio RSymphony (which will be in Debian)
-lsa Rstem ?
+lsa Rstem
mpm geneplotter (BioC ?)
-mvgraph statDA ?
-sabreR contains binary, lintian override ?
-sgeostat license ? package `5gone ?
sisus annotate, Biobase (BioC ?)
-dlmap empty DESCRIPTION, added patch, still fails ?
REJECTED
---------------------------------------------------------------------------------------------
rngwell19937 non-commercial
spatialkernel gpc library in non-commercial
+
CANNOT BUILD
----------------------------------------------------------------------------------------------
CarbonEL Mac OS X only
VhayuR Vhauy required
gputools nvcc (>= 2.1)
klar svmlight (non-commercial)
-rgrs xclip
rimage C++ needs g++ 4.* update
+sabreR contains binary, lintian override ?
svGUI komodo
wgaim asreml-r
xgobi Xgobi
TODO:
+---------------------------------------------------------------------------------
+aroma.apd requires aroma.light from BioC
+aroma.core requires aroma.light from BioC
+IDPmisc broken R file (!!)
+Rsymphony build bombs, patch ?, Debian build exists
+SuppDists build bombs, DESCRIPTION needs space, patch added
+cmprskContin fortan95 compiler wants memory model
+mvgraph statDA ? need pkg-config ?