RESOLVED
---------------------------------------------------------------------------------
matlab Rice U added
-rwt matlab
+rwt matlab Rice U
arrayImpute matlab
rtiff tiff + gpl added
sendplot rtiff
mlbench added
adabag mlbench
ipred mlbench
-gwidgetsWWW Rpad, rebuilt
+gWidgetsWWW Rpad, rebuilt
rgrs xclip added alias_run,sysreq
scagnostics scagnostics license -- added
seewave flac added alias_run,sysreq
snpXpert tcltk2 now builds
tlnise tlnise license added
-toosm tlnise now builds
-SuppDists build bombs, DESCRIPTION needs space, patch added
+tsModel tlnise now builds
qAnalyst SuppDists
survcomp SuppDists
+BayesTree added one-line C++ patch
+HAPim added one-char DESCRIPTION patch
+MatchIt added one-line patch
+race remove debian/ from source tarball -- fixed in cran2deb
+RJaCGH contains zlib, added patch to remove it
+seqinr contains zlib, added patch to remove it
+rSymPy small patch for python path
+svSocket small patch re tcl path
+rgrs xclip sysreq/force added
+RLadyBug added patch, now works
+dlmap now works
+TSpadi now works
+ash statlib ?
+alphahull now works
+sgeostat now works
-OPEN ISSUES
+BLACKLISTED
---------------------------------------------------------------------------------
ADaCGH tilingArray (BioC)
-BayesTree C++ patch ?
DAAGbio limma (BioC ?)
metaMA limma (BioC ?)
GFMaps affy (BioC)
GOSim GO.db (BioC)
-Geneland mapproj
-HAPim odd build failure
-MatchIt need small patch
Metabonomic PROcess (BioC ?)
-PhViD LBE ????
-RJaCGH contains zlib, may need patch
-RLadyBug needs small patch
-Rsymphony build bombs, patch ?, Debian build
+PhViD LBE (BioC)
SNPMaP affxparser, SNPMaP.cdm (BioC)
SubpathwayMiner KEGG.db (BioC)
gene2pathway KEGG.db (BioC)
-TSpaid build bombs, wild linking ?
-alphahull removed ?
-ash statlib ?
bayesCGH snapCGH (BioC ?)
-classGraoh Rgraphviz (BioC ?)
+classGraph Rgraphviz (BioC ?)
gcExplorer Rgraphviz (BioC ?)
logilasso Rgraphviz (BioC ?)
pcalg Rgraphviz (BioC ?)
celsius BioBase (BioC ?)
multtest BioBase (BioC ?)
hopach BioBase (BioC ?)
-multtest BioBase (BioC ?)
GExMap multtest (BioC)
LMGene multtest (BioC)
+PCS multtest (BioC)
crosshybDetector marray (disappread ?)
-dlmap empty DESCRIPTION ?
-fPortfolio RSymphony (which will be in Debian)
-lsa Rstem ?
+lsa Rstem
mpm geneplotter (BioC ?)
-mvgraph statDA ?
-rSymPy small patch
-race remove debian/ from source tarball ?
-sabreR contains binary, lintian override ?
-seqinr contains zlib
-sgeostat license ? package gone ?
sisus annotate, Biobase (BioC ?)
-svSocket small patch re tcl path
REJECTED
---------------------------------------------------------------------------------------------
rngwell19937 non-commercial
spatialkernel gpc library in non-commercial
+
CANNOT BUILD
----------------------------------------------------------------------------------------------
CarbonEL Mac OS X only
VhayuR Vhauy required
gputools nvcc (>= 2.1)
klar svmlight (non-commercial)
-rgrs xclip
rimage C++ needs g++ 4.* update
+sabreR contains binary, lintian override ?
svGUI komodo
wgaim asreml-r
xgobi Xgobi
TODO:
+---------------------------------------------------------------------------------
+aroma.apd requires aroma.light from BioC
+aroma.core requires aroma.light from BioC
+IDPmisc broken R file (!!)
+Rsymphony build bombs, patch ?, Debian build exists
+SuppDists build bombs, DESCRIPTION needs space, patch added
+cmprskContin fortan95 compiler wants memory model
+mvgraph statDA ? need pkg-config ?