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[cran2deb.git] / PackagesWithIssues.txt

diff --git a/PackagesWithIssues.txt b/PackagesWithIssues.txt
index f589bf0fe9f7159332845118614cd9876b78f624..5ba7aa5d29c7cb2d7e07346c2f74b2a1146883eb 100644 (file)
--- a/PackagesWithIssues.txt
+++ b/PackagesWithIssues.txt
@@ -31,6 +31,11 @@ survcomp     SuppDists
 BayesTree                                              added one-line C++ patch 
 HAPim                                                  added one-char DESCRIPTION patch
 MatchIt                                                        added one-line patch
+race                                                   remove debian/ from source tarball -- fixed in cran2deb                         
+RJaCGH                                                 contains zlib, added patch to remove it
+seqinr                                                 contains zlib, added patch to remove it
+rSymPy                                                 small patch for python path
+svSocket                                               small patch re tcl path
 
 OPEN ISSUES
 ---------------------------------------------------------------------------------
@@ -39,16 +44,14 @@ DAAGbio             limma (BioC ?)
 metaMA         limma (BioC ?)
 GFMaps         affy (BioC)
 GOSim          GO.db (BioC)
-Geneland       mapproj
 Metabonomic    PROcess (BioC ?)
 PhViD          LBE ????
 RLadyBug                                               added small patch, still fails ??
-RJaCGH                                                 contains zlib, may need patch
-Rsymphony                                              build bombs, patch ?, Debian build
+Rsymphony                                              build bombs, patch ?, Debian build exists
 SNPMaP         affxparser, SNPMaP.cdm (BioC)                                           
 SubpathwayMiner KEGG.db (BioC)
 gene2pathway    KEGG.db (BioC)
-TSpaid                                                 build bombs, wild linking ?
+TSpadi                                                 build bombs on i386 but not amd64, wild linking ?
 alphahull      removed ?
 ash                                    statlib ?
 bayesCGH       snapCGH (BioC ?)
@@ -64,18 +67,14 @@ multtest    BioBase (BioC ?)
 GExMap         multtest (BioC)
 LMGene         multtest (BioC)
 crosshybDetector marray (disappread ?)
-dlmap          empty DESCRIPTION ?
 fPortfolio     RSymphony (which will be in Debian)
 lsa            Rstem ?
 mpm            geneplotter (BioC ?)
 mvgraph                statDA ?
-rSymPy                                                 small patch
-race                                                   remove debian/ from source tarball ?                            
 sabreR                                                 contains binary, lintian override ?
-seqinr                                                 contains zlib 
-sgeostat       license ? package gone ?
+sgeostat       license ? package `5gone ?
 sisus          annotate, Biobase (BioC ?)
-svSocket                                               small patch re tcl path
+dlmap                                                  empty DESCRIPTION, added patch, still fails ?
 
 REJECTED
 ---------------------------------------------------------------------------------------------