- CHANGES IN APE VERSION 2.8-1
+ CHANGES IN APE VERSION 3.0
+
+
+NEW FEATURES
+
+ o plot.phylo() has a new option 'rotate.tree' to rotate unrooted,
+ fan or radial trees around the center of the plot.
BUG FIXES
o mantel.test() could return P-values > 1 with the default
two-tailed test.
+ o extract.clade() sometimes shuffled some tip labels (thanks to
+ Ludovic Mallet and Mahendra Mariadassou for the fix).
+
+ o clustal() should now by default find the executable under Windows.
+
OTHER CHANGES
o The code of yule() has been simplified and is now much faster for
big trees.
+ o The code of mantel.test() has been adjusted to be consistent
+ with common permutation tests.
+
+ o The C code of base.freq() has been improved and is now nearly 8
+ times faster.
+
CHANGES IN APE VERSION 2.8