final wrap for ape 3.0

[ape.git] / NEWS

diff --git a/NEWS b/NEWS
index 17f28e25af52fa9bf1440a6c698b0179ac4f1a94..55d0adc836df886582039bfc36a8f2d039694ada 100644 (file)
--- a/NEWS
+++ b/NEWS
@@ -1,3 +1,36 @@
+               CHANGES IN APE VERSION 3.0
+
+
+NEW FEATURES
+
+    o plot.phylo() has a new option 'rotate.tree' to rotate unrooted,
+      fan or radial trees around the center of the plot.
+
+
+BUG FIXES
+
+    o mantel.test() could return P-values > 1 with the default
+      two-tailed test.
+
+    o extract.clade() sometimes shuffled some tip labels (thanks to
+      Ludovic Mallet and Mahendra Mariadassou for the fix).
+
+    o clustal() should now by default find the executable under Windows.
+
+
+OTHER CHANGES
+
+    o The code of yule() has been simplified and is now much faster for
+      big trees.
+
+    o The code of mantel.test() has been adjusted to be consistent
+      with common permutation tests.
+
+    o The C code of base.freq() has been improved and is now nearly 8
+      times faster.
+
+
+
                CHANGES IN APE VERSION 2.8
 
 
@@ -22,6 +55,11 @@ NEW FEATURES
       the new function ltt.plot.coords.
 
 
+BUG FIXES
+
+    o prop.part() crashed if some trees had some multichotomies.
+
+
 
                CHANGES IN APE VERSION 2.7-3