updated reorder.phylo.Rd

[ape.git] / NEWS

diff --git a/NEWS b/NEWS
index ec8918ae97f2c4e7d9bfe7e8a7d19fc2a6599041..46af03fc06ef1fcf9e8a61d37760c26251265397 100644 (file)
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+               CHANGES IN APE VERSION 3.0-6
+
+
+NEW FEATURES
+
+    o reorder.phylo() has a new order, "postorder", and a new option
+      index.only = TRUE to return only the vector of indices (the tree
+      is unmodified; see ?reorder.phylo for details).
+
+
+BUG FIXES
+
+    o reorder(, "pruningwise") made R crash if the rows of the edge
+      matrix are in random order.
+
+
+OTHER CHANGES
+
+    o dist.nodes() is now 6 to 10 times faster.
+
+    o reorder(, "cladewise") is now faster. The change is not very
+      visible for small trees (n < 1000) but this can be more than
+      1000 faster for big trees (n >= 1e4).
+
+
+
                CHANGES IN APE VERSION 3.0-5
 
 
+BUG FIXES
+
+    o ace() should better catch errors when SEs cannot be computed.
+
+
 OTHER CHANGES
 
     o write.dna(format = "fasta") now conforms more closely to the