* samtools-0.1.5-22 (r432)

[samtools.git] / Makefile.mingw

diff --git a/Makefile.mingw b/Makefile.mingw
index ffa1422043908dbb38ccae530166e176d7148925..80e8009d17baf955252b27935323f53d0a6c2d55 100644 (file)
--- a/Makefile.mingw
+++ b/Makefile.mingw
@@ -1,11 +1,10 @@
-#CC=                   gcc
-#AR=                   ar
-CC=                    gccwine # on my laptop, this is an alias to [wine "c:/mingw/bin/gcc"]
-AR=                    arwine
+CC=                    gcc.exe
+AR=                    ar.exe
 CFLAGS=                -g -Wall -O2
-DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_CURSES_LIB=0 #-D_USE_KNETFILE
+DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_CURSES_LIB=2 -D_USE_KNETFILE
 LOBJS=         bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
-                       bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o bam_sort.o
+                       bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o bam_sort.o \
+                       knetfile.o
 AOBJS=         bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o     \
                        bamtk.o
@@ -19,16 +18,6 @@ LIBPATH=
 .c.o:
                $(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
 
-all-recur lib-recur clean-recur cleanlocal-recur install-recur:
-               @target=`echo $@ | sed s/-recur//`; \
-               wdir=`pwd`; \
-               list='$(SUBDIRS)'; for subdir in $$list; do \
-                       cd $$subdir; \
-                       $(MAKE) -f Makefile.mingw AR="$(AR)" CC="$(CC)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
-                               INCLUDES="$(INCLUDES)" LIBPATH="$(LIBPATH)" $$target || exit 1; \
-                       cd $$wdir; \
-               done;
-
 all:$(PROG)
 
 lib:libbam.a
@@ -36,9 +25,8 @@ lib:libbam.a
 libbam.a:$(LOBJS)
                $(AR) -cru $@ $(LOBJS)
 
-### For the curses library: comment out `-lcurses' if you do not have curses installed
 samtools:lib $(AOBJS)
-               $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LIBPATH) -lm -L. -lbam -Lwin32 -lz #-lcurses
+               $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LIBPATH) -lm -L. -lbam -Lwin32 -lz -lcurses -lws2_32
 
 razip:razip.o razf.o
                $(CC) $(CFLAGS) -o $@ razf.o razip.o -lz
@@ -63,7 +51,5 @@ glf.o:glf.h
 faidx.o:faidx.h razf.h khash.h
 faidx_main.o:faidx.h razf.h
 
-cleanlocal:
-               rm -fr gmon.out *.o a.out *.dSYM razip $(PROG) *~ *.a
-
-clean:cleanlocal-recur
+clean:
+               rm -fr gmon.out *.o *.exe *.dSYM razip $(PROG) *~ *.a