further cleanup of duplicate @RG tag warning reporting

[bamtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 9a72fcc78a74f1b00051aea52d53f2bd4a8bdae9..ee9be979bc288de3d54a3f6571543ef833bcd51c 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -2,15 +2,16 @@ CXX=          g++
 CXXFLAGS=      -Wall -O3\r
 PROG=          bamtools\r
 API=           BGZF.o BamReader.o BamWriter.o BamMultiReader.o
-UTILS=         bamtools_options.o
-TOOLKIT=       bamtools_count.o bamtools_coverage.o bamtools_header.o bamtools_index.o bamtools_merge.o bamtools_sam.o bamtools_sort.o bamtools_stats.o
+UTILS=         bamtools_options.o bamtools_utilities.o
+TOOLKIT=       bamtools_convert.o bamtools_count.o bamtools_coverage.o bamtools_filter.o bamtools_header.o bamtools_index.o bamtools_merge.o bamtools_sam.o bamtools_sort.o bamtools_stats.o
 MAIN=          bamtools.o
+OBJS=          $(API) $(UTILS) $(TOOLKIT) $(MAIN)
 LIBS=          -lz
 \r
 all: $(PROG)\r
 \r
-bamtools: $(API) $(UTILS) $(TOOLKIT) $(MAIN)\r
-       $(CXX) $(CXXFLAGS) -o $@ $(API) $(UTILS) $(TOOLKIT) $(MAIN) $(LIBS)\r
+bamtools: $(OBJS)\r
+       $(CXX) $(CXXFLAGS) -o $@ $(OBJS) $(LIBS)\r
 \r
 clean:\r
        rm -fr gmon.out *.o *.a a.out *~\r