converted padded SAM to unpadded SAM

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 1b03921f940398dbf104522391595351ce67c8eb..99f7ecaf454c8bda2ee632d6529e6538e2608c31 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -8,7 +8,7 @@ LOBJS=          bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
 AOBJS=         bam_tview.o bam_plcmd.o sam_view.o      \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o     \
                        bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
-                       cut_target.o phase.o bam2depth.o
+                       cut_target.o phase.o bam2depth.o padding.o
 PROG=          samtools
 INCLUDES=      -I.
 SUBDIRS=       . bcftools misc
@@ -38,7 +38,7 @@ all:$(PROG)
 lib:libbam.a
 
 libbam.a:$(LOBJS)
-               $(AR) -cru $@ $(LOBJS)
+               $(AR) -csru $@ $(LOBJS)
 
 samtools:lib-recur $(AOBJS)
                $(CC) $(CFLAGS) -o $@ $(AOBJS) -Lbcftools $(LIBPATH) libbam.a -lbcf $(LIBCURSES) -lm -lz