KNETFILE_O= knetfile.o
LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o \
- $(KNETFILE_O) bam_sort.o sam_header.o
+ $(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o
AOBJS= bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o \
bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
- bamtk.o kaln.o
+ bamtk.o kaln.o bam_mcns.o
PROG= samtools
INCLUDES=
SUBDIRS= . misc
faidx.o:faidx.h razf.h khash.h
faidx_main.o:faidx.h razf.h
+
+libbam.1.dylib-local:$(LOBJS)
+ libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz
+
+libbam.so.1-local:$(LOBJS)
+ $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc -lz
+
+dylib:
+ @$(MAKE) cleanlocal; \
+ case `uname` in \
+ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.so.1-local;; \
+ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local;; \
+ *) echo 'Unknown OS';; \
+ esac
+
+
cleanlocal:
- rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip $(PROG) *~ *.a
+ rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip $(PROG) *~ *.a *.so.* *.so *.dylib
clean:cleanlocal-recur