* samtools-0.1.8-2 (r617)

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 0ab4498a10f81cfb4f0d677d393e354551b379b2..88d82178ed6b4a82b983091f97b51e2042d3f157 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -4,10 +4,10 @@ DFLAGS=               -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1
 KNETFILE_O=    knetfile.o
 LOBJS=         bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
                        bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o \
-                       $(KNETFILE_O) bam_sort.o sam_header.o
+                       $(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o
 AOBJS=         bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o     \
-                       bamtk.o kaln.o
+                       bamtk.o kaln.o bam_mcns.o
 PROG=          samtools
 INCLUDES=
 SUBDIRS=       . misc
@@ -66,7 +66,23 @@ sam_header.o:sam_header.h khash.h
 faidx.o:faidx.h razf.h khash.h
 faidx_main.o:faidx.h razf.h
 
+
+libbam.1.dylib-local:$(LOBJS)
+               libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz
+
+libbam.so.1-local:$(LOBJS)
+               $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc -lz
+
+dylib:
+               @$(MAKE) cleanlocal; \
+               case `uname` in \
+                       Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.so.1-local;; \
+                       Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local;; \
+                       *) echo 'Unknown OS';; \
+               esac
+
+
 cleanlocal:
-               rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip $(PROG) *~ *.a
+               rm -fr gmon.out *.o a.out *.exe *.dSYM razip bgzip $(PROG) *~ *.a *.so.* *.so *.dylib
 
 clean:cleanlocal-recur